Examples

Project Objectives

The big data revolution makes it hard for researchers to directly explore their data. In most cases, data needs to be digested to a great extent to become accessible to domain experts. The primary motivation of developing OmicsAnalyst is to bring big data close to domain experts by leveraging two key technologies dimensionality reduction and 3D visual analytics. We show case the utilities of this platform for two common big omics data types - single-cell RNAseq and multi-omics datasets.

OmicsAnalyst has been developed to address three needs: 1) exploratory analysis of large omics and single cell data 2) multivariate-based multi-omics integration and 3) intuitive web-based 3D visualization. The 3D-based scatter plot visualization was implemented using innovative WebGL technology. It supports various style customization, comparative analysis, dimension reduction and clustering for hypothesis generation and systems-level insights.

Upload a Graph File
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Pancreatic cells
PBMCs
IBD metabolites/microbes

Supported file formats: .graphml, .sif or .txt file containing edge list. For more information, please read our FAQs or download example files below.

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OmicsNet has been developed and tested using Chrome and FireFox, although it also works in the lastest version of Safari and Edge. We suggest you to switch to Chrome browser for best user experience.
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The Safari version 10.1 is known to have issues with OmicsNet, we suggest you to upgrade to higher version or switch to Chrome browser or Mozilla Firefox for best user experience.
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