Update History

  • Added non-parametric tests, limma, DEseq2, EdgeR for comparative analysis (01/18/2020);
  • Users can now highlight edges connecting omics sample pairs in integrative analysis; (01/15/2020);
  • Code refactoring and interface updates (01/10/2020);
  • Improved zooming effect (updating distances instead of size) (01/05/2020);
  • Added support for clustering within meta-data groups (01/02/2020);
  • Enhanced node rendering for better visual experience (12/31/2019);
  • Added tutorials - overview of OmicsAnalyst and multi-omics case-study (12/23/2019);
  • Users can now switch the content between the main view and inset view (12/18/2019);
  • Updated the gene annotation libraries based on the lastest NCBI and UniProt (12/16/2019);
  • Improved the color schemes based on ggplots for better visual experience (12/10/2019);
  • Added three new example datasets for testing and use case studies (12/05/2019);
  • Users can now customize the floor and background colors of the 3D environment (12/01/2019);
  • Removed support for t-SNE in favor of UMAP due to performance as well as the need to preserve both both local and the global structure in the data for the clustering step (11/28/2019);
  • Added support for O2PLS for integrative omics data analysis (11/25/2019);
  • Code cleaning and refactoring (11/22/2019);
  • Added support for Uniform Manifold Approximation and Projection (UMAP) for single-cell RNAseq data (11/20/2019);
  • Added support for synchronized view for both sample space and feature space (11/15/2019);
  • Added support for Procrustes Analysis for integrative visualization of two omics data sets (11/10/2019);
  • Added support for t-SNE for clustering scRNAseq data (11/08/2019)
  • Added support for single-cell RNAseq analysis based on Seurat workflow (11/05/2019)
  • Added an option for "explosive view" to further seperate clusters for better visual exploration (11/01/2019)
  • Added support for plotting ellipsoid around each cluster (10/25/2019);
  • Users now can double click the contour to select the corresponding clusters for comparative analysis (10/12/2019);
  • Added "contours" on the detected clusters (10/03/2019);
  • Added support for Density Peak Clustering (DPC) algorithm for discerning clusters of data points (09/28/2019)
  • Added support for shading effect for data points (09/21/2019)
  • Interface updates and code cleaning (09/15/2019)
  • OmicsAnalyst website setup (08/20/2019)
  • Improved performance for visualizing ~10,000 of data points (07/24/2019)
  • First prototype of 3D scatter plot with WebGL (07/01/2019)
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